Variant report

Variant	rs56079819
Chromosome Location	chr2:21314851-21314852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21294169..21296510-chr2:21313708..21315944,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11693545	0.83[AMR][1000 genomes]
rs11693760	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11693775	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11693870	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12052779	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1367113	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1367115	0.83[EUR][1000 genomes]
rs17395333	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17395512	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17399144	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1897083	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2115838	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2163203	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2195597	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2337383	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2878956	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4665176	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4665178	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4665179	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4665492	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56090741	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56201838	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56306424	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs565202	0.94[ASN][1000 genomes]
rs571468	0.92[ASN][1000 genomes]
rs594677	0.92[ASN][1000 genomes]
rs61539677	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62122514	0.81[EUR][1000 genomes]
rs62122515	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62122516	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62122520	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62133263	0.85[EUR][1000 genomes]
rs62133264	0.82[EUR][1000 genomes]
rs62135035	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6548010	0.83[EUR][1000 genomes]
rs6548011	0.83[EUR][1000 genomes]
rs6726115	0.83[EUR][1000 genomes]
rs754523	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7566030	0.81[EUR][1000 genomes]
rs7575840	0.81[EUR][1000 genomes]
rs7590135	0.83[EUR][1000 genomes]
rs934198	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21313800-21316400	Enhancers	Liver	Liver
3	chr2:21313800-21316800	Enhancers	Fetal Intestine Small	intestine
4	chr2:21314800-21315200	Enhancers	HepG2	liver

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