Variant report

Variant	rs4665492
Chromosome Location	chr2:21294039-21294040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21274973..21277054-chr2:21293701..21295645,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11693545	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693760	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11693775	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11693870	0.82[EUR][1000 genomes]
rs12052779	0.81[EUR][1000 genomes]
rs1367113	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1367115	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1367117	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs1713223	1.00[JPT][hapmap]
rs17395333	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17395512	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17399144	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1897083	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2115838	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2163203	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2195597	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2337383	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2878956	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4665176	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4665178	0.82[EUR][1000 genomes]
rs4665179	0.82[EUR][1000 genomes]
rs56079819	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56090741	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56201838	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56306424	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs588245	0.91[JPT][hapmap]
rs61539677	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62122514	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62122515	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62122516	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62122520	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62135035	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6548010	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6548011	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6726115	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs754523	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs754524	0.95[ASN][1000 genomes]
rs7566030	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7575840	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7590135	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs934198	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21292600-21294400	Enhancers	Fetal Intestine Large	intestine
2	chr2:21292600-21295200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:21292800-21294400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:21292800-21294400	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:21292800-21294400	Enhancers	Fetal Intestine Small	intestine
6	chr2:21292800-21294400	Enhancers	HUVEC	blood vessel
7	chr2:21292800-21294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:21292800-21294600	Flanking Active TSS	HepG2	liver
9	chr2:21293400-21294400	Enhancers	Placenta	Placenta
10	chr2:21293800-21294400	Flanking Active TSS	Liver	Liver
11	chr2:21293800-21294400	Enhancers	Lung	lung

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