Variant report
| Variant | rs754524 |
|---|---|
| Chromosome Location | chr2:21311541-21311542 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11693545 | 0.95[ASN][1000 genomes] |
| rs11693760 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11693775 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12720854 | 1.00[LWK][hapmap] |
| rs1367115 | 0.91[ASN][1000 genomes] |
| rs1367117 | 0.80[CHD][hapmap];0.82[JPT][hapmap] |
| rs1713223 | 0.80[CHD][hapmap];1.00[JPT][hapmap] |
| rs17395333 | 0.94[ASN][1000 genomes] |
| rs17395512 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs17399144 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2115838 | 0.88[ASN][1000 genomes] |
| rs2163203 | 0.94[ASN][1000 genomes] |
| rs2195597 | 0.94[ASN][1000 genomes] |
| rs2337383 | 0.92[ASN][1000 genomes] |
| rs2878956 | 0.88[ASN][1000 genomes] |
| rs4665176 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4665492 | 0.95[ASN][1000 genomes] |
| rs56090741 | 0.94[ASN][1000 genomes] |
| rs56201838 | 0.92[ASN][1000 genomes] |
| rs56306424 | 0.92[ASN][1000 genomes] |
| rs588245 | 0.80[CHD][hapmap];0.91[JPT][hapmap] |
| rs62122514 | 0.91[ASN][1000 genomes] |
| rs62133264 | 0.80[ASN][1000 genomes] |
| rs62135035 | 0.94[ASN][1000 genomes] |
| rs6548010 | 0.89[ASN][1000 genomes] |
| rs6548011 | 0.89[ASN][1000 genomes] |
| rs6726115 | 0.89[ASN][1000 genomes] |
| rs7566030 | 0.87[ASN][1000 genomes] |
| rs7575840 | 0.88[ASN][1000 genomes] |
| rs7590135 | 0.91[ASN][1000 genomes] |
| rs934198 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs754524 | CENPO | cis | parietal | SCAN |
| rs754524 | ATAD2B | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21311200-21312400 | Enhancers | HepG2 | liver |
