Variant report

Variant	rs7575840
Chromosome Location	chr2:21273490-21273491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11693545	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11693760	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11693775	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11693870	0.80[EUR][1000 genomes]
rs1367113	0.92[EUR][1000 genomes]
rs1367115	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1367117	0.91[CEU][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap]
rs1713223	0.80[CHD][hapmap];1.00[JPT][hapmap]
rs17395333	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17395512	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17399144	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1897083	0.81[EUR][1000 genomes]
rs2115838	0.80[EUR][1000 genomes]
rs2163203	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2195597	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2337383	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4665176	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4665178	0.80[EUR][1000 genomes]
rs4665179	0.80[EUR][1000 genomes]
rs4665492	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56079819	0.81[EUR][1000 genomes]
rs56090741	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56201838	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56306424	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs588245	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs61539677	0.81[EUR][1000 genomes]
rs62122514	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62122515	0.91[EUR][1000 genomes]
rs62122516	0.92[EUR][1000 genomes]
rs62122520	0.80[EUR][1000 genomes]
rs62135035	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6548010	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6548011	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726115	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs754523	0.81[EUR][1000 genomes]
rs754524	0.88[ASN][1000 genomes]
rs7566030	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7590135	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs934198	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21270600-21276000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:21270600-21276400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:21271000-21274800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:21271000-21276200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:21271000-21276400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:21271000-21276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:21271200-21275800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:21271200-21279000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:21272200-21274400	Weak transcription	HepG2	liver

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