Variant report

Variant	rs2115838
Chromosome Location	chr2:21350324-21350325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21348742..21351585-chr2:21351799..21353530,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11693545	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11693760	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11693775	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11693870	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12052779	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1367115	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367117	0.82[JPT][hapmap]
rs1713223	1.00[JPT][hapmap]
rs17395333	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17395512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17399144	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1897083	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2163203	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2195597	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2337383	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2878956	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4665176	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4665178	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4665179	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4665492	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56079819	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56090741	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56201838	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56306424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs588245	0.91[JPT][hapmap]
rs61539677	0.89[EUR][1000 genomes]
rs62122514	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62122520	0.88[EUR][1000 genomes]
rs62133263	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62133264	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62135035	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6548010	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6548011	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6726115	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs754523	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs754524	0.88[ASN][1000 genomes]
rs7566030	0.80[EUR][1000 genomes]
rs7575840	0.80[EUR][1000 genomes]
rs7590135	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs934198	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2621130	chr2:21350288-21351601	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21350000-21352000	Weak transcription	HepG2	liver

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