Variant report

Variant	rs4714887
Chromosome Location	chr6:45884703-45884704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45879897..45882120-chr6:45883023..45885109,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1128514	0.98[ASN][1000 genomes]
rs2297834	0.98[ASN][1000 genomes]
rs34208595	0.91[ASN][1000 genomes]
rs35143374	0.91[ASN][1000 genomes]
rs3814071	0.98[ASN][1000 genomes]
rs4714888	0.91[ASN][1000 genomes]
rs6458477	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918415	0.98[ASN][1000 genomes]
rs6937735	0.91[ASN][1000 genomes]
rs7746554	0.98[ASN][1000 genomes]
rs7746593	0.98[ASN][1000 genomes]
rs7773041	0.98[ASN][1000 genomes]
rs9296473	0.98[ASN][1000 genomes]
rs9969032	0.98[ASN][1000 genomes]
rs9969070	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
4	chr6:45879800-45889600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:45880000-45884800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:45882000-45885200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:45882000-45889600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:45882000-45889600	Weak transcription	Lung	lung
10	chr6:45882000-45889600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:45882200-45884800	Weak transcription	Right Ventricle	heart
12	chr6:45882200-45889600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:45882200-45890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:45882200-45891200	Weak transcription	Placenta	Placenta
15	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:45882600-45886000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:45883000-45885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:45883400-45884800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:45883800-45885200	Enhancers	HSMMtube	muscle
20	chr6:45883800-45887200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:45884200-45885400	Enhancers	Fetal Heart	heart
22	chr6:45884200-45886800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:45884400-45885200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:45884400-45886800	Enhancers	Psoas Muscle	Psoas
25	chr6:45884400-45887200	Genic enhancers	Left Ventricle	heart
26	chr6:45884600-45885800	Enhancers	Right Atrium	heart
27	chr6:45884600-45886600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:45884600-45890400	Weak transcription	Fetal Kidney	kidney

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