Variant report

Variant	rs6918415
Chromosome Location	chr6:45878967-45878968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1128514	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297834	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34208595	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34522587	0.91[EUR][1000 genomes]
rs34866782	0.81[EUR][1000 genomes]
rs35143374	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35448663	0.81[EUR][1000 genomes]
rs35489689	0.81[EUR][1000 genomes]
rs3814071	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714887	0.98[ASN][1000 genomes]
rs4714888	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6458476	0.83[EUR][1000 genomes]
rs6458477	0.99[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67715157	0.91[EUR][1000 genomes]
rs67919193	0.88[EUR][1000 genomes]
rs6911790	0.81[EUR][1000 genomes]
rs6935445	0.81[EUR][1000 genomes]
rs6937735	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746554	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746593	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773041	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296473	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969032	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969070	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45870200-45879600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
10	chr6:45871000-45879400	Weak transcription	Right Ventricle	heart
11	chr6:45871000-45879400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:45871000-45881800	Weak transcription	Lung	lung
13	chr6:45871200-45879200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
15	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
16	chr6:45876200-45882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:45876400-45881800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:45877200-45882000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr6:45877400-45882400	Strong transcription	Left Ventricle	heart
20	chr6:45878000-45879600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:45878400-45880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:45878400-45880000	Strong transcription	Fetal Intestine Small	intestine
23	chr6:45878400-45882400	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:45878600-45882400	Strong transcription	Fetal Intestine Large	intestine
25	chr6:45878800-45879600	Weak transcription	Right Atrium	heart

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