Variant report

Variant	rs9969032
Chromosome Location	chr6:45871340-45871341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1128514	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297834	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34208595	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34522587	0.94[EUR][1000 genomes]
rs34866782	0.84[EUR][1000 genomes]
rs35143374	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35448663	0.84[EUR][1000 genomes]
rs35489689	0.84[EUR][1000 genomes]
rs3777562	0.81[EUR][1000 genomes]
rs3814071	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714887	0.98[ASN][1000 genomes]
rs4714888	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6458476	0.91[EUR][1000 genomes]
rs6458477	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67715157	0.94[EUR][1000 genomes]
rs67919193	0.97[EUR][1000 genomes]
rs6911790	0.84[EUR][1000 genomes]
rs6918415	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935445	0.84[EUR][1000 genomes]
rs6937735	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746554	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746593	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773041	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296473	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969070	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45869200-45871400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:45869200-45871400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:45870200-45879600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:45870400-45872400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
13	chr6:45871000-45871400	Strong transcription	Left Ventricle	heart
14	chr6:45871000-45876200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:45871000-45878600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:45871000-45879400	Weak transcription	Right Ventricle	heart
17	chr6:45871000-45879400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:45871000-45881800	Weak transcription	Lung	lung
19	chr6:45871200-45878400	Weak transcription	Fetal Intestine Small	intestine
20	chr6:45871200-45879200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
22	chr6:45871200-45885600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links