Variant report

Variant	rs6937735
Chromosome Location	chr6:45882502-45882503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1128514	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297834	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34208595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522587	0.97[EUR][1000 genomes]
rs34866782	0.87[EUR][1000 genomes]
rs35143374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35448663	0.87[EUR][1000 genomes]
rs35489689	0.87[EUR][1000 genomes]
rs3777562	0.84[EUR][1000 genomes]
rs3814071	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714887	0.91[ASN][1000 genomes]
rs4714888	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458476	0.88[EUR][1000 genomes]
rs6458477	0.91[ASN][1000 genomes]
rs67715157	0.97[EUR][1000 genomes]
rs67919193	0.94[EUR][1000 genomes]
rs6911790	0.87[EUR][1000 genomes]
rs6918415	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935445	0.87[EUR][1000 genomes]
rs7746554	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746593	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773041	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296473	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9969032	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9969070	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3345269	chr6:45882448-45882931	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
3	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
5	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
6	chr6:45879800-45889600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:45880000-45884600	Weak transcription	Right Atrium	heart
8	chr6:45880000-45884800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:45880600-45883400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:45880600-45883800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:45881200-45882600	Strong transcription	Fetal Intestine Small	intestine
12	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:45881400-45883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:45882000-45884400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:45882000-45885200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:45882000-45889600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:45882000-45889600	Weak transcription	Lung	lung
18	chr6:45882000-45889600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:45882200-45883400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:45882200-45884800	Weak transcription	Right Ventricle	heart
21	chr6:45882200-45889600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:45882200-45890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:45882200-45891200	Weak transcription	Placenta	Placenta
24	chr6:45882400-45884200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:45882400-45884400	Weak transcription	Left Ventricle	heart
26	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine

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