Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1128514	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs2297834	0.85[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs34208595	0.88[EUR][1000 genomes]
rs34522587	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35143374	0.91[EUR][1000 genomes]
rs3777562	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs3814071	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs4714888	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs67715157	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67919193	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911790	1.00[CEU][hapmap]
rs6918415	0.83[EUR][1000 genomes]
rs6935445	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs6937735	0.88[EUR][1000 genomes]
rs7746554	0.88[EUR][1000 genomes]
rs7746593	0.88[EUR][1000 genomes]
rs7773041	0.81[EUR][1000 genomes]
rs9296473	0.88[EUR][1000 genomes]
rs9969032	0.91[EUR][1000 genomes]
rs9969070	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
2	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:45864600-45865800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:45864800-45867400	Weak transcription	Psoas Muscle	Psoas
5	chr6:45865000-45868400	Weak transcription	Osteobl	bone
6	chr6:45865000-45870000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:45865200-45867000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:45865200-45870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:45865200-45870000	Weak transcription	HSMMtube	muscle
10	chr6:45865400-45867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:45865400-45867000	Weak transcription	Right Atrium	heart
12	chr6:45865400-45867400	Weak transcription	Left Ventricle	heart
13	chr6:45865400-45867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:45865400-45868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:45865400-45870000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:45865600-45867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:45865600-45867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45865600-45868400	Weak transcription	NHDF-Ad	bronchial
19	chr6:45865600-45868800	Weak transcription	Right Ventricle	heart

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