Variant report

Variant	rs34208595
Chromosome Location	chr6:45879936-45879937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45879897..45882120-chr6:45883023..45885109,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1128514	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297834	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34522587	0.97[EUR][1000 genomes]
rs34866782	0.87[EUR][1000 genomes]
rs35143374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35448663	0.87[EUR][1000 genomes]
rs35489689	0.87[EUR][1000 genomes]
rs3777562	0.84[EUR][1000 genomes]
rs3814071	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714887	0.91[ASN][1000 genomes]
rs4714888	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458476	0.88[EUR][1000 genomes]
rs6458477	0.91[ASN][1000 genomes]
rs67715157	0.97[EUR][1000 genomes]
rs67919193	0.94[EUR][1000 genomes]
rs6911790	0.87[EUR][1000 genomes]
rs6918415	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935445	0.87[EUR][1000 genomes]
rs6937735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746554	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746593	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773041	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296473	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9969032	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9969070	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
8	chr6:45871000-45881800	Weak transcription	Lung	lung
9	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
10	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
11	chr6:45876200-45882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:45876400-45881800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:45877200-45882000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr6:45877400-45882400	Strong transcription	Left Ventricle	heart
15	chr6:45878400-45880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:45878400-45880000	Strong transcription	Fetal Intestine Small	intestine
17	chr6:45878400-45882400	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:45878600-45882400	Strong transcription	Fetal Intestine Large	intestine
19	chr6:45879200-45882200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr6:45879400-45881400	Strong transcription	Right Ventricle	heart
21	chr6:45879400-45882000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:45879600-45880000	Enhancers	Right Atrium	heart
23	chr6:45879600-45880600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:45879600-45881400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:45879600-45882000	Strong transcription	Adipose Nuclei	Adipose
26	chr6:45879600-45882200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:45879800-45880000	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:45879800-45889600	Weak transcription	Fetal Muscle Trunk	muscle

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