Variant report

Variant	rs4715957
Chromosome Location	chr6:15020085-15020086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15019075..15021891-chr6:15031714..15033767,2	K562	blood:
2	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1259067	0.85[EUR][1000 genomes]
rs1259068	0.85[EUR][1000 genomes]
rs1259073	0.81[EUR][1000 genomes]
rs1259074	0.91[EUR][1000 genomes]
rs1259082	0.80[EUR][1000 genomes]
rs34694507	0.90[EUR][1000 genomes]
rs6459387	0.84[EUR][1000 genomes]
rs714979	0.90[EUR][1000 genomes]
rs724626	0.85[EUR][1000 genomes]
rs724627	0.85[EUR][1000 genomes]
rs9383010	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv970723	chr6:14997807-15023765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15017600-15020800	Enhancers	Placenta	Placenta
2	chr6:15017800-15021800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:15017800-15022000	Weak transcription	Fetal Heart	heart
4	chr6:15017800-15027000	Weak transcription	Right Atrium	heart
5	chr6:15018000-15021600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:15018000-15022000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:15018200-15020600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:15018200-15020600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:15018200-15021800	Weak transcription	Left Ventricle	heart
10	chr6:15018200-15021800	Weak transcription	GM12878-XiMat	blood
11	chr6:15018200-15022000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15018200-15023600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:15018200-15027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:15018400-15022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:15018400-15022200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:15018400-15029200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:15019000-15020200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:15019000-15022000	Weak transcription	Fetal Thymus	thymus
19	chr6:15019200-15020600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:15019200-15021000	Enhancers	K562	blood
21	chr6:15019200-15022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:15019600-15020200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:15019600-15020400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:15019600-15020600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:15019600-15021000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:15019600-15021400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:15019600-15021600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:15020000-15020200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr6:15020000-15020400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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