Variant report

Variant	rs9383010
Chromosome Location	chr6:15021917-15021918
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15021091..15023577-chr6:15036400..15038540,2	K562	blood:
2	chr6:15021640..15023757-chr6:15243450..15245673,2	MCF-7	breast:
3	chr6:15021072..15024779-chr6:15089168..15092500,5	MCF-7	breast:
4	chr6:15015675..15017325-chr6:15020820..15023601,2	MCF-7	breast:
5	chr6:15015356..15017558-chr6:15021067..15023495,2	MCF-7	breast:
6	chr6:14942413..14944482-chr6:15021624..15023866,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4715957	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv970723	chr6:14997807-15023765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15017800-15022000	Weak transcription	Fetal Heart	heart
2	chr6:15017800-15027000	Weak transcription	Right Atrium	heart
3	chr6:15018000-15022000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:15018200-15022000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:15018200-15023600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:15018200-15027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:15018400-15022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:15018400-15022200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:15018400-15029200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:15019000-15022000	Weak transcription	Fetal Thymus	thymus
11	chr6:15019200-15022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:15020200-15022400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:15020400-15022800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:15020600-15022200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:15020600-15022400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:15020800-15022800	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:15021200-15022200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:15021200-15023800	Enhancers	Placenta	Placenta
19	chr6:15021400-15022400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:15021400-15022800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
21	chr6:15021600-15022000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:15021600-15022200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:15021600-15022200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:15021600-15022400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:15021600-15022600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr6:15021600-15022600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:15021600-15022600	Enhancers	Adipose Nuclei	Adipose
28	chr6:15021600-15022800	Enhancers	Fetal Muscle Leg	muscle
29	chr6:15021800-15022200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:15021800-15022200	Enhancers	Right Ventricle	heart
31	chr6:15021800-15022400	Enhancers	Left Ventricle	heart
32	chr6:15021800-15022400	Enhancers	Spleen	Spleen
33	chr6:15021800-15022600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:15021800-15022600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr6:15021800-15022800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:15021800-15022800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:15021800-15023000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr6:15021800-15023400	Enhancers	GM12878-XiMat	blood
39	chr6:15021800-15024400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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