Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97476575..97480108-chr9:97483463..97488738,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10217143	0.92[MEX][hapmap]
rs10821390	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs10821392	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs10821398	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs10993344	0.82[CEU][hapmap];0.80[CHB][hapmap];0.80[CHD][hapmap]
rs12338859	0.88[MEX][hapmap]
rs2584806	0.86[TSI][hapmap]
rs356131	0.85[TSI][hapmap]
rs446540	0.84[TSI][hapmap]
rs4743969	0.85[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap]
rs4744369	0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs4744378	0.85[TSI][hapmap]
rs4744386	0.85[CEU][hapmap]
rs7022894	0.84[AFR][1000 genomes]
rs7027708	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs7847277	0.82[CEU][hapmap]
rs7848139	0.89[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap]
rs7851726	0.85[TSI][hapmap]
rs7862219	0.92[MEX][hapmap]
rs7866848	0.81[CHB][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4744370	CNN3	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97476200-97480000	Weak transcription	Placenta	Placenta
2	chr9:97476600-97477800	Enhancers	Fetal Brain Male	brain
3	chr9:97476800-97480200	Weak transcription	NHDF-Ad	bronchial
4	chr9:97477600-97478400	Weak transcription	HepG2	liver

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