Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97473271..97475779-chr9:97486432..97489420,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016013	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821401	0.84[EUR][1000 genomes]
rs10993365	0.80[EUR][1000 genomes]
rs10993372	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1751434	0.87[EUR][1000 genomes]
rs183066	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2584806	1.00[CEU][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28540393	0.85[EUR][1000 genomes]
rs35487382	0.90[EUR][1000 genomes]
rs356131	0.96[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs356141	0.91[EUR][1000 genomes]
rs368138	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs391784	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs406654	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs414253	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4385527	0.96[CEU][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs446540	1.00[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4744370	0.81[EUR][1000 genomes]
rs4744378	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs4744403	0.96[CEU][hapmap]
rs7019720	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7026071	0.86[EUR][1000 genomes]
rs7851726	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7866848	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97475200-97475400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:97475200-97476800	Enhancers	NHDF-Ad	bronchial
3	chr9:97475200-97477000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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