Variant report

Variant	rs10821401
Chromosome Location	chr9:97592688-97592689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97591718..97593908-chr9:97672689..97674656,2	MCF-7	breast:
2	chr9:97591789..97593682-chr9:97596295..97598175,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016013	0.89[EUR][1000 genomes]
rs10993365	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993370	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10993372	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993377	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11787821	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1751434	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs183066	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2183958	0.81[AMR][1000 genomes]
rs2584806	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28540393	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35487382	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs356131	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs356141	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs368138	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs391784	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs406654	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs414253	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4385527	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs446540	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744369	0.84[EUR][1000 genomes]
rs4744378	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744403	0.84[EUR][1000 genomes]
rs7019720	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7026071	0.87[EUR][1000 genomes]
rs7851726	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7866848	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344137	chr9:97590602-97594805	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr9:97567400-97593400	Weak transcription	Thymus	Thymus
3	chr9:97570000-97594400	Weak transcription	Dnd41	blood
4	chr9:97570000-97601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97572000-97601600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97572600-97593600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:97580600-97600200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:97582000-97599400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:97582200-97594000	Weak transcription	NHEK	skin
12	chr9:97584200-97593800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:97589200-97598800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:97589200-97600400	Weak transcription	Primary T cells from cord blood	blood
16	chr9:97589200-97602000	Weak transcription	Lung	lung
17	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
18	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
19	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
20	chr9:97589400-97598600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:97590000-97596600	Weak transcription	Fetal Heart	heart
22	chr9:97590200-97596800	Weak transcription	Fetal Intestine Small	intestine
23	chr9:97590400-97598600	Weak transcription	Fetal Intestine Large	intestine
24	chr9:97590400-97602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:97590600-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:97591000-97593200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:97591000-97595800	Weak transcription	Liver	Liver
29	chr9:97591000-97609200	Weak transcription	Osteobl	bone
30	chr9:97591600-97592800	Enhancers	GM12878-XiMat	blood
31	chr9:97592000-97597000	Weak transcription	HepG2	liver
32	chr9:97592200-97594600	Weak transcription	Hela-S3	cervix
33	chr9:97592200-97594600	Weak transcription	HSMM	muscle
34	chr9:97592200-97599800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:97592200-97608400	Weak transcription	HSMMtube	muscle
36	chr9:97592200-97609400	Weak transcription	NHDF-Ad	bronchial
37	chr9:97592600-97599200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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