Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:97476575..97480108-chr9:97483463..97488738,5	MCF-7	breast:
2	chr9:97483583..97486374-chr9:97487367..97488932,2	K562	blood:
3	chr9:97484874..97487089-chr9:97487277..97488932,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1016013	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821401	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10993365	0.81[EUR][1000 genomes]
rs10993372	0.81[EUR][1000 genomes]
rs1751434	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs183066	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2584806	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28540393	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35487382	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs356131	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs356141	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs368138	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs391784	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs414253	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs446540	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744369	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744378	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7019720	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7026071	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7851726	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7866848	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97479000-97488400	Weak transcription	Fetal Intestine Large	intestine
2	chr9:97483400-97488200	Weak transcription	Placenta	Placenta
3	chr9:97483600-97488400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:97483600-97488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:97483600-97488600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:97483800-97488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:97483800-97488400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:97483800-97488400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:97483800-97488400	Weak transcription	NHEK	skin
10	chr9:97484000-97488400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:97484000-97488400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:97484200-97486600	Weak transcription	HepG2	liver
13	chr9:97484200-97488400	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:97484400-97488400	Weak transcription	Fetal Kidney	kidney
15	chr9:97484800-97488600	Weak transcription	NHDF-Ad	bronchial

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