Variant report

Variant	rs183066
Chromosome Location	chr9:97517432-97517433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97516453..97518846-chr9:97522716..97525073,3	MCF-7	breast:
2	chr9:97510928..97513839-chr9:97515556..97518922,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1016013	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821401	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821415	0.92[CEU][hapmap]
rs10993365	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993370	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10993372	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10993377	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10993398	0.92[CEU][hapmap]
rs11787821	0.82[EUR][1000 genomes]
rs12235316	0.92[CEU][hapmap];0.84[YRI][hapmap]
rs1751434	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2584806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28540393	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35487382	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs356131	0.96[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs356141	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs368138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs391784	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs406654	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs414253	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4385527	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs446540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744369	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744378	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744403	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744411	0.92[CEU][hapmap]
rs7019720	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7026071	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7851726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853195	0.92[CEU][hapmap]
rs7866848	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
2	chr9:97489800-97521600	Weak transcription	Fetal Thymus	thymus
3	chr9:97489800-97522000	Weak transcription	Thymus	Thymus
4	chr9:97489800-97522400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:97490000-97519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:97490000-97521600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:97490200-97519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:97497000-97522000	Weak transcription	Placenta	Placenta
9	chr9:97497200-97522200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:97502800-97518800	Weak transcription	K562	blood
11	chr9:97503200-97522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:97503800-97518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:97504400-97522600	Weak transcription	Ovary	ovary
14	chr9:97504600-97521800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:97505200-97522200	Weak transcription	NHLF	lung
16	chr9:97506200-97521600	Weak transcription	Fetal Stomach	stomach
17	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:97506400-97522000	Weak transcription	Lung	lung
19	chr9:97506400-97522200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:97506400-97526000	Weak transcription	Small Intestine	intestine
21	chr9:97509000-97522600	Weak transcription	Gastric	stomach
22	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
23	chr9:97509400-97519000	Weak transcription	NH-A	brain
24	chr9:97509800-97519000	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:97511200-97522200	Weak transcription	Fetal Brain Male	brain
26	chr9:97511800-97519000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:97511800-97522000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:97512000-97519200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:97512000-97522400	Weak transcription	HepG2	liver
30	chr9:97512400-97519000	Weak transcription	Brain Substantia Nigra	brain
31	chr9:97512400-97519200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:97512400-97522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:97512600-97518800	Weak transcription	HSMMtube	muscle
34	chr9:97512600-97519000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:97512600-97519000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:97512600-97519000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:97512600-97519000	Weak transcription	Left Ventricle	heart
38	chr9:97512600-97519000	Weak transcription	A549	lung
39	chr9:97512600-97519200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:97512600-97519200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:97512600-97519200	Weak transcription	Brain Anterior Caudate	brain
42	chr9:97512600-97519200	Weak transcription	NHDF-Ad	bronchial
43	chr9:97512600-97519400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:97512600-97520200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:97512600-97521600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:97512600-97521600	Weak transcription	Adipose Nuclei	Adipose
47	chr9:97512600-97521800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:97512600-97522000	Weak transcription	Primary B cells from cord blood	blood
49	chr9:97512600-97522000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr9:97512600-97522000	Weak transcription	Fetal Muscle Trunk	muscle

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