Variant report

Variant	rs10993372
Chromosome Location	chr9:97619090-97619091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1016013	0.85[EUR][1000 genomes]
rs10821401	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821415	0.96[CEU][hapmap]
rs10993365	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993370	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993377	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10993394	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10993397	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10993398	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10993418	0.83[EUR][1000 genomes]
rs1123534	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11787821	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12235316	0.96[CEU][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1751434	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs183066	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183958	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2584806	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28540393	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35487382	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs356131	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs356141	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs368138	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs391784	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs406654	0.81[EUR][1000 genomes]
rs414253	0.83[EUR][1000 genomes]
rs4385527	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs446540	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes]
rs4744369	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4744378	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4744403	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744411	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019720	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7026071	0.83[EUR][1000 genomes]
rs7851726	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs7853195	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7865239	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7866848	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97602400-97620200	Weak transcription	GM12878-XiMat	blood
4	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
9	chr9:97609800-97620600	Weak transcription	Fetal Stomach	stomach
10	chr9:97609800-97623800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:97610200-97623200	Weak transcription	Fetal Intestine Large	intestine
12	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
13	chr9:97610400-97620400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:97610400-97622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:97610400-97623600	Weak transcription	Fetal Kidney	kidney
16	chr9:97610600-97620400	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:97610600-97622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:97610600-97623000	Weak transcription	NHLF	lung
19	chr9:97611200-97622600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:97611400-97620800	Weak transcription	Placenta	Placenta
21	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:97612800-97626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:97614800-97622400	Weak transcription	Primary T cells from cord blood	blood
25	chr9:97614800-97623400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr9:97614800-97623400	Weak transcription	Esophagus	oesophagus
27	chr9:97615000-97620600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:97615000-97620600	Weak transcription	Thymus	Thymus
29	chr9:97615000-97622600	Weak transcription	HSMMtube	muscle
30	chr9:97615000-97622800	Weak transcription	NHDF-Ad	bronchial
31	chr9:97615000-97623200	Weak transcription	Pancreas	Pancrea
32	chr9:97615000-97623200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr9:97616200-97623600	Weak transcription	Fetal Lung	lung
34	chr9:97616400-97620600	Weak transcription	Fetal Intestine Small	intestine
35	chr9:97616400-97622600	Weak transcription	Osteobl	bone
36	chr9:97616400-97623200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:97616400-97623400	Weak transcription	Brain Angular Gyrus	brain
38	chr9:97616600-97621400	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:97616600-97629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:97616800-97622600	Weak transcription	NH-A	brain
41	chr9:97616800-97623200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:97616800-97623400	Weak transcription	Stomach Mucosa	stomach
43	chr9:97617000-97620600	Weak transcription	HSMM	muscle
44	chr9:97617000-97627600	Weak transcription	Adipose Nuclei	Adipose
45	chr9:97617200-97620000	Weak transcription	A549	lung
46	chr9:97617200-97623200	Weak transcription	HepG2	liver
47	chr9:97618400-97619400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:97618400-97622400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:97618600-97619400	Weak transcription	Lung	lung
50	chr9:97618600-97620600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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