Variant report

Variant	rs4753808
Chromosome Location	chr11:107465180-107465181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107464081..107465916-chr11:107468034..107470721,2	K562	blood:
2	chr11:107459880..107461439-chr11:107463535..107466067,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12419100	0.86[ASN][1000 genomes]
rs17107151	0.82[ASN][1000 genomes]
rs17107158	0.82[ASN][1000 genomes]
rs17107171	0.85[ASN][1000 genomes]
rs17107173	0.86[ASN][1000 genomes]
rs17107185	0.87[ASN][1000 genomes]
rs1939897	0.92[AFR][1000 genomes]
rs4754233	0.98[ASN][1000 genomes]
rs481084	0.83[ASN][1000 genomes]
rs510699	0.86[ASN][1000 genomes]
rs538138	0.83[ASN][1000 genomes]
rs56875550	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57430153	0.87[ASN][1000 genomes]
rs57842576	0.82[ASN][1000 genomes]
rs58407219	0.87[ASN][1000 genomes]
rs60891405	0.94[ASN][1000 genomes]
rs7112409	0.98[ASN][1000 genomes]
rs73555568	0.87[ASN][1000 genomes]
rs7925258	0.88[AFR][1000 genomes]
rs883543	0.82[ASN][1000 genomes]
rs956717	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107460400-107465200	Active TSS	Brain Anterior Caudate	brain
2	chr11:107463000-107465200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:107463200-107482600	Weak transcription	HSMMtube	muscle
4	chr11:107464000-107465600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:107464000-107465800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:107464400-107465800	Active TSS	Fetal Brain Female	brain
7	chr11:107464600-107465200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr11:107464800-107465200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr11:107464800-107465200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr11:107464800-107465200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr11:107464800-107465200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
12	chr11:107465000-107465200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:107465000-107465200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:107465000-107465200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr11:107465000-107465200	Flanking Active TSS	Brain Angular Gyrus	brain
16	chr11:107465000-107465200	Bivalent Enhancer	Brain Germinal Matrix	brain
17	chr11:107465000-107465200	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
18	chr11:107465000-107465400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:107465000-107465800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr11:107465000-107469200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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