Variant report

Variant	rs538138
Chromosome Location	chr11:107439937-107439938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:107439914-107440037	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107435985..107437994-chr11:107439189..107441256,2	K562	blood:

Variant related genes	Relation type
ALKBH8	TF binding region
ENSG00000137760	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12419100	0.92[ASN][1000 genomes]
rs17107068	0.84[EUR][1000 genomes]
rs17107149	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107151	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107158	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107171	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107173	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107185	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41416346	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4753808	0.83[ASN][1000 genomes]
rs4754227	0.84[EUR][1000 genomes]
rs4754228	0.84[EUR][1000 genomes]
rs4754229	0.84[EUR][1000 genomes]
rs4754231	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754232	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754233	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs481084	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs510699	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56770371	0.84[EUR][1000 genomes]
rs56865667	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56875550	0.81[ASN][1000 genomes]
rs57430153	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57842576	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58407219	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60891405	0.95[EUR][1000 genomes]
rs7112409	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73555568	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883543	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956717	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107437000-107440600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:107437400-107440800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:107437400-107442000	Weak transcription	Fetal Brain Male	brain
4	chr11:107437600-107440400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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