Variant report

Variant	rs883543
Chromosome Location	chr11:107435996-107435997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10502094	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes]
rs12419100	0.91[ASN][1000 genomes]
rs17107068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17107149	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107171	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107173	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107185	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41416346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753808	0.82[ASN][1000 genomes]
rs4754227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4754228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4754229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4754231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754233	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs481084	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510699	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs538138	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56770371	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56865667	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57430153	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57842576	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58407219	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59647547	0.96[AMR][1000 genomes]
rs59943365	0.83[EUR][1000 genomes]
rs60891405	0.89[EUR][1000 genomes]
rs7112409	0.89[EUR][1000 genomes]
rs73555568	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942056	1.00[YRI][hapmap]
rs956717	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107434400-107436000	Flanking Active TSS	Dnd41	blood
2	chr11:107434600-107436000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr11:107434600-107437000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr11:107434800-107437000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:107435000-107436600	Active TSS	K562	blood
6	chr11:107435000-107436800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:107435000-107436800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:107435000-107436800	Active TSS	Fetal Brain Male	brain
9	chr11:107435000-107437000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:107435000-107437000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:107435000-107437000	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr11:107435000-107437000	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr11:107435000-107437200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr11:107435000-107437200	Active TSS	Brain Anterior Caudate	brain
15	chr11:107435200-107436000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:107435200-107436800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:107435200-107436800	Active TSS	GM12878-XiMat	blood
18	chr11:107435200-107437000	Active TSS	Brain Cingulate Gyrus	brain
19	chr11:107435200-107437000	Active TSS	NHDF-Ad	bronchial
20	chr11:107435400-107436000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:107435400-107436000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:107435400-107436000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr11:107435400-107436000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr11:107435400-107436000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:107435400-107436000	Flanking Active TSS	Liver	Liver
26	chr11:107435400-107436000	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr11:107435400-107436000	Active TSS	Right Atrium	heart
28	chr11:107435400-107436000	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr11:107435400-107436000	Flanking Active TSS	HUVEC	blood vessel
30	chr11:107435400-107436000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr11:107435400-107436000	Flanking Active TSS	NHEK	skin
32	chr11:107435400-107436400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr11:107435400-107436800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:107435400-107436800	Active TSS	Thymus	Thymus
35	chr11:107435400-107437000	Active TSS	H1 Cell Line	embryonic stem cell
36	chr11:107435400-107437000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr11:107435400-107437000	Active TSS	Brain Germinal Matrix	brain
38	chr11:107435400-107437000	Active TSS	Fetal Brain Female	brain
39	chr11:107435400-107437000	Active TSS	Psoas Muscle	Psoas
40	chr11:107435400-107437000	Active TSS	A549	lung
41	chr11:107435400-107437200	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr11:107435400-107437400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:107435400-107437800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:107435600-107436000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:107435600-107436000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
46	chr11:107435600-107436000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:107435600-107436000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr11:107435600-107436000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr11:107435600-107436000	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr11:107435600-107436000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links