Variant report

Variant	rs58407219
Chromosome Location	chr11:107451501-107451502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107450869..107453681-chr11:107457308..107459492,2	K562	blood:
2	chr11:107450869..107454942-chr11:107456753..107459492,3	K562	blood:
3	chr11:107447510..107449666-chr11:107450655..107453909,3	K562	blood:

Variant related genes	Relation type
ENSG00000270969	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12419100	0.99[ASN][1000 genomes]
rs17107068	0.84[EUR][1000 genomes]
rs17107149	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17107151	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107158	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107171	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107173	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41416346	0.84[EUR][1000 genomes]
rs4753808	0.87[ASN][1000 genomes]
rs4754227	0.84[EUR][1000 genomes]
rs4754228	0.84[EUR][1000 genomes]
rs4754229	0.84[EUR][1000 genomes]
rs4754231	0.84[EUR][1000 genomes]
rs4754232	0.84[EUR][1000 genomes]
rs4754233	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs481084	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510699	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs538138	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56770371	0.84[EUR][1000 genomes]
rs56865667	0.84[EUR][1000 genomes]
rs56875550	0.85[ASN][1000 genomes]
rs57430153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57842576	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60891405	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7112409	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73555568	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883543	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs956717	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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