Variant report

Variant	rs57842576
Chromosome Location	chr11:107436824-107436825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:107436785-107436944	MCF10A-Er-Src	breast:	n/a	n/a
2	MAZ	chr11:107435847-107437019	K562	blood:	n/a	chr11:107436094-107436105
3	EP300	chr11:107435790-107437681	K562	blood:	n/a	chr11:107436068-107436078
4	ELF1	chr11:107435774-107436865	HCT-116	colon:	n/a	chr11:107436270-107436281 chr11:107436269-107436282 chr11:107436252-107436265
5	CBX3	chr11:107436073-107437001	K562	blood:	n/a	n/a
6	MYC	chr11:107435635-107436978	K562	blood:	n/a	chr11:107436094-107436105 chr11:107436120-107436130
7	IRF1	chr11:107436497-107436913	K562	blood:	n/a	n/a
8	GATA2	chr11:107436604-107437121	K562	blood:	n/a	chr11:107436640-107436650
9	FOS	chr11:107436287-107436985	HUVEC	blood vessel:	n/a	n/a
10	FOS	chr11:107436697-107437021	MCF10A-Er-Src	breast:	n/a	n/a
11	MXI1	chr11:107435305-107436898	SK-N-SH	brain:	n/a	n/a
12	TEAD4	chr11:107436272-107437094	K562	blood:	n/a	n/a
13	RELA	chr11:107435876-107436873	GM19099	blood:	n/a	n/a
14	FOS	chr11:107436723-107437012	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr11:107436766-107436881	ProgFib	skin:	n/a	n/a
16	RCOR1	chr11:107436004-107436870	K562	blood:	n/a	n/a
17	JUN	chr11:107435398-107437180	K562	blood:	n/a	n/a
18	POLR2A	chr11:107435841-107436895	SK-N-MC	brain:	n/a	n/a
19	NR2F2	chr11:107435788-107437165	K562	blood:	n/a	n/a
20	POLR2A	chr11:107435539-107436895	PFSK-1	brain:	n/a	n/a
21	ZNF384	chr11:107436248-107436856	K562	blood:	n/a	n/a
22	GATA2	chr11:107435752-107437028	HUVEC	blood vessel:	n/a	chr11:107436640-107436650
23	HCFC1	chr11:107435613-107436931	K562	blood:	n/a	n/a
24	CEBPB	chr11:107436813-107436876	K562	blood:	n/a	n/a
25	CEBPD	chr11:107436641-107437152	K562	blood:	n/a	n/a
26	HCFC1	chr11:107435528-107436890	Hela-S3	cervix:	n/a	n/a
27	STAT5A	chr11:107435992-107437120	K562	blood:	n/a	n/a
28	POLR2A	chr11:107435628-107437441	Raji	blood:	n/a	n/a
29	TAL1	chr11:107435923-107437061	K562	blood:	n/a	n/a
30	IRF1	chr11:107435627-107437006	K562	blood:	n/a	n/a
31	TBL1XR1	chr11:107436779-107437013	K562	blood:	n/a	n/a
32	PML	chr11:107435875-107436883	K562	blood:	n/a	n/a
33	MXI1	chr11:107435482-107437097	IMR90	lung:	n/a	n/a
34	JUND	chr11:107435644-107437911	K562	blood:	n/a	chr11:107437305-107437314
35	SIN3AK20	chr11:107435957-107436859	MCF-7	breast:	n/a	n/a
36	ARID3A	chr11:107436399-107437018	K562	blood:	n/a	n/a
37	FOSL1	chr11:107436584-107437035	K562	blood:	n/a	chr11:107436869-107436880
38	FOSL1	chr11:107436658-107437081	K562	blood:	n/a	chr11:107436869-107436880
39	POLR2A	chr11:107436710-107436978	K562	blood:	n/a	n/a
40	MAFF	chr11:107436496-107436985	K562	blood:	n/a	n/a
41	NR2F2	chr11:107436708-107437023	K562	blood:	n/a	n/a
42	POLR2A	chr11:107436120-107436978	K562	blood:	n/a	n/a
43	ZMIZ1	chr11:107435759-107437000	K562	blood:	n/a	n/a
44	POLR2A	chr11:107435611-107437057	K562	blood:	n/a	n/a
45	GTF2F1	chr11:107435667-107436896	Hela-S3	cervix:	n/a	n/a
46	ZNF143	chr11:107435616-107436849	GM12878	blood:	n/a	chr11:107436464-107436473 chr11:107436466-107436475 chr11:107436464-107436482 chr11:107436468-107436487
47	POLR2A	chr11:107435574-107436891	GM12891	blood:	n/a	n/a
48	ZNF143	chr11:107435618-107436895	K562	blood:	n/a	chr11:107436464-107436473 chr11:107436466-107436475 chr11:107436464-107436482 chr11:107436468-107436487
49	CEBPB	chr11:107435704-107437043	K562	blood:	n/a	chr11:107436042-107436053
50	CEBPD	chr11:107436565-107437165	K562	blood:	n/a	n/a

Variant related genes	Relation type
ALKBH8	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502094	0.93[AMR][1000 genomes]
rs12419100	0.91[ASN][1000 genomes]
rs17107068	0.89[EUR][1000 genomes]
rs17107149	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17107151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107158	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107171	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107173	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107185	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41416346	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753808	0.82[ASN][1000 genomes]
rs4754227	0.89[EUR][1000 genomes]
rs4754228	0.89[EUR][1000 genomes]
rs4754229	0.89[EUR][1000 genomes]
rs4754231	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754232	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754233	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs481084	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510699	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs538138	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56770371	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56865667	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57430153	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58407219	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59647547	0.93[AMR][1000 genomes]
rs59943365	0.83[EUR][1000 genomes]
rs60891405	0.89[EUR][1000 genomes]
rs7112409	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73555568	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs883543	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956717	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107434600-107437000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:107434800-107437000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:107435000-107437000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107435000-107437000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:107435000-107437000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr11:107435000-107437000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:107435000-107437200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:107435000-107437200	Active TSS	Brain Anterior Caudate	brain
9	chr11:107435200-107437000	Active TSS	Brain Cingulate Gyrus	brain
10	chr11:107435200-107437000	Active TSS	NHDF-Ad	bronchial
11	chr11:107435400-107437000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr11:107435400-107437000	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:107435400-107437000	Active TSS	Brain Germinal Matrix	brain
14	chr11:107435400-107437000	Active TSS	Fetal Brain Female	brain
15	chr11:107435400-107437000	Active TSS	Psoas Muscle	Psoas
16	chr11:107435400-107437000	Active TSS	A549	lung
17	chr11:107435400-107437200	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr11:107435400-107437400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:107435400-107437800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:107435600-107437000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:107435600-107437000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:107435600-107437000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr11:107435600-107437000	Active TSS	Fetal Kidney	kidney
24	chr11:107435600-107437000	Active TSS	Fetal Muscle Trunk	muscle
25	chr11:107435600-107437000	Active TSS	Right Ventricle	heart
26	chr11:107435600-107437200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr11:107435600-107437400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr11:107435600-107437400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:107435600-107437400	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr11:107435800-107437000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr11:107435800-107437000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:107435800-107437000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:107435800-107437000	Active TSS	Brain Angular Gyrus	brain
34	chr11:107435800-107437000	Active TSS	Left Ventricle	heart
35	chr11:107435800-107437000	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:107435800-107437000	Active TSS	Hela-S3	cervix
37	chr11:107435800-107437000	Bivalent/Poised TSS	HepG2	liver
38	chr11:107435800-107437400	Active TSS	Colon Smooth Muscle	Colon
39	chr11:107436000-107437000	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr11:107436000-107437000	Active TSS	Brain Substantia Nigra	brain
41	chr11:107436000-107437000	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr11:107436000-107437000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr11:107436000-107437000	Active TSS	Rectal Smooth Muscle	rectum
44	chr11:107436000-107437200	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:107436200-107437000	Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr11:107436400-107437000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:107436400-107437000	Active TSS	Colonic Mucosa	Colon
48	chr11:107436600-107437000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:107436600-107437000	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr11:107436600-107437000	Flanking Active TSS	Primary B cells from peripheral blood	blood

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