Variant report

Variant	rs4774892
Chromosome Location	chr15:57056932-57056933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1010700	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11632471	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12898521	0.82[AMR][1000 genomes]
rs12900441	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12906591	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12906749	0.81[AMR][1000 genomes]
rs12913871	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12913960	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1477475	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1895640	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57387969	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6493885	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57052000-57057200	Weak transcription	Primary B cells from cord blood	blood
2	chr15:57052200-57057800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:57052400-57059800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:57052600-57057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:57052600-57057600	Weak transcription	Placenta	Placenta
6	chr15:57052800-57057200	Weak transcription	HSMMtube	muscle
7	chr15:57053000-57057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:57053000-57057200	Weak transcription	NHLF	lung
9	chr15:57053200-57057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:57053200-57057200	Weak transcription	HSMM	muscle
11	chr15:57053200-57057200	Weak transcription	Osteobl	bone
12	chr15:57053200-57057400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:57053200-57057400	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:57053200-57057400	Weak transcription	HMEC	breast
15	chr15:57053200-57057400	Weak transcription	NHDF-Ad	bronchial
16	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:57053400-57057200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:57053400-57057400	Weak transcription	NHEK	skin
19	chr15:57054800-57058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:57055000-57057800	Enhancers	Adipose Nuclei	Adipose
21	chr15:57055400-57058000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:57055400-57058000	Enhancers	Fetal Lung	lung
23	chr15:57055400-57058000	Enhancers	Fetal Stomach	stomach
24	chr15:57055400-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:57055400-57060200	Enhancers	HUVEC	blood vessel
26	chr15:57055600-57058000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr15:57055800-57057800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:57055800-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:57056000-57057000	Weak transcription	Fetal Brain Female	brain
30	chr15:57056400-57057200	Weak transcription	Primary T cells from cord blood	blood
31	chr15:57056400-57057200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr15:57056400-57057800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:57056400-57058000	Enhancers	Fetal Brain Male	brain
34	chr15:57056400-57059400	Enhancers	Dnd41	blood
35	chr15:57056600-57057000	Weak transcription	NH-A	brain
36	chr15:57056600-57057600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:57056600-57057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:57056800-57057000	Enhancers	Small Intestine	intestine
39	chr15:57056800-57057400	Weak transcription	Fetal Muscle Leg	muscle
40	chr15:57056800-57057800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood

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