Variant report

Variant	rs57387969
Chromosome Location	chr15:57060282-57060283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57059367..57061157-chr15:57069753..57071946,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1010700	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11071293	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11632471	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638497	0.88[EUR][1000 genomes]
rs11638580	0.88[EUR][1000 genomes]
rs12593286	0.80[EUR][1000 genomes]
rs12595822	0.89[EUR][1000 genomes]
rs12898521	0.89[EUR][1000 genomes]
rs12900045	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12900244	0.89[EUR][1000 genomes]
rs12900441	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12905514	0.88[EUR][1000 genomes]
rs12906591	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906749	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12908806	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12910403	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12913361	0.88[EUR][1000 genomes]
rs12913871	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12913960	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12915816	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1424694	0.88[EUR][1000 genomes]
rs1477475	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1812395	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1895640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052640	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2161934	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2414480	0.80[EUR][1000 genomes]
rs28575268	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601984	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4774244	0.80[EUR][1000 genomes]
rs4774892	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs521904	0.88[EUR][1000 genomes]
rs538382	0.86[EUR][1000 genomes]
rs553421	0.88[EUR][1000 genomes]
rs62022931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62022933	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62022934	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022954	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493885	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7162317	0.89[EUR][1000 genomes]
rs795032	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:57057800-57062400	Weak transcription	Adipose Nuclei	Adipose
4	chr15:57057800-57064800	Weak transcription	HSMMtube	muscle
5	chr15:57057800-57065000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:57057800-57065000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:57057800-57065000	Weak transcription	Osteobl	bone
8	chr15:57058000-57061400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:57058000-57062400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:57058000-57065000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:57058000-57065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:57058000-57065200	Weak transcription	Ovary	ovary
13	chr15:57058000-57066400	Weak transcription	Thymus	Thymus
14	chr15:57059800-57063400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:57059800-57065200	Weak transcription	K562	blood
16	chr15:57059800-57065200	Weak transcription	NH-A	brain
17	chr15:57060200-57061400	Weak transcription	HUVEC	blood vessel

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