Variant report

Variant	rs2052640
Chromosome Location	chr15:57035029-57035030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57029486..57031384-chr15:57033144..57035574,2	K562	blood:
2	chr15:57022349..57024643-chr15:57034116..57035934,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010700	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11071293	0.96[ASN][1000 genomes]
rs11632471	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11638497	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11638580	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12438709	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442018	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12592389	0.80[EUR][1000 genomes]
rs12593286	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12595822	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12898521	0.86[EUR][1000 genomes]
rs12900045	0.94[ASN][1000 genomes]
rs12900244	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12900441	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905514	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12906591	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12908806	0.96[ASN][1000 genomes]
rs12910403	0.94[ASN][1000 genomes]
rs12913361	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12913871	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12913960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915816	0.95[ASN][1000 genomes]
rs1424694	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1477475	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812395	0.96[ASN][1000 genomes]
rs1895640	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279299	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28575268	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3816752	0.85[EUR][1000 genomes]
rs4601984	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs521904	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs538382	0.82[EUR][1000 genomes]
rs553421	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs559736	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57387969	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62022931	0.87[EUR][1000 genomes]
rs62022933	0.84[EUR][1000 genomes]
rs62022934	0.85[EUR][1000 genomes]
rs62022954	0.94[ASN][1000 genomes]
rs6493885	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7162317	0.87[EUR][1000 genomes]
rs7165831	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7168178	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7169454	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs795032	0.83[EUR][1000 genomes]
rs8025391	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57035000-57037200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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