Variant report

Variant	rs1812395
Chromosome Location	chr15:57066164-57066165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57061117..57063691-chr15:57064747..57067595,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1010700	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10518870	0.90[MEX][hapmap]
rs11071293	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630168	0.80[CEU][hapmap]
rs11632471	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11638497	0.82[EUR][1000 genomes]
rs11638580	0.82[EUR][1000 genomes]
rs11638707	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[GIH][hapmap];0.91[MEX][hapmap]
rs11856558	0.85[CHB][hapmap]
rs11857706	0.86[CHB][hapmap]
rs12442189	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap]
rs12591502	0.82[CEU][hapmap]
rs12592389	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs12595822	0.83[EUR][1000 genomes]
rs12898521	0.84[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs12900045	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900244	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs12900441	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12903283	0.86[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap]
rs12903336	0.86[GIH][hapmap];0.95[MEX][hapmap]
rs12903862	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[GIH][hapmap];0.90[MEX][hapmap]
rs12905514	0.84[CEU][hapmap];0.86[CHB][hapmap];0.95[MEX][hapmap];0.82[EUR][1000 genomes]
rs12906591	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906749	0.89[AMR][1000 genomes]
rs12908806	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12910403	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12911381	0.84[CEU][hapmap];0.82[CHB][hapmap];0.95[MEX][hapmap]
rs12912666	0.81[CEU][hapmap]
rs12913361	0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12913871	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12913960	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12915816	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1424694	0.84[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1477475	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17238845	0.86[CHB][hapmap];0.95[MEX][hapmap]
rs1895640	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1979467	0.81[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap]
rs2052640	0.96[ASN][1000 genomes]
rs2161934	0.97[ASN][1000 genomes]
rs2170463	0.95[MEX][hapmap]
rs2279298	0.87[CEU][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap]
rs2279299	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs28575268	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620278	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap]
rs3803457	0.81[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap]
rs3816752	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs3929265	0.81[CHB][hapmap]
rs4601984	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774244	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap]
rs4774886	0.84[CEU][hapmap];0.81[CHB][hapmap];0.95[MEX][hapmap]
rs521904	0.81[EUR][1000 genomes]
rs538382	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs553421	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs57387969	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62022931	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62022933	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62022934	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022954	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493885	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7162317	0.84[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs7168178	0.81[CHB][hapmap]
rs795032	0.80[EUR][1000 genomes]
rs8025391	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs8043223	0.80[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:57058000-57066400	Weak transcription	Thymus	Thymus
3	chr15:57063400-57068000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:57065000-57066200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:57065200-57068400	Enhancers	Fetal Thymus	thymus
6	chr15:57065200-57069000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:57065400-57066200	Enhancers	A549	lung
8	chr15:57065400-57066400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:57065600-57066200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr15:57065600-57066200	Enhancers	Osteobl	bone
11	chr15:57065600-57067800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:57065600-57068800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:57065800-57066200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:57065800-57066200	Enhancers	HepG2	liver
15	chr15:57065800-57067000	Enhancers	HSMMtube	muscle
16	chr15:57065800-57067200	Enhancers	HUVEC	blood vessel
17	chr15:57065800-57068000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:57065800-57068000	Weak transcription	NHEK	skin
19	chr15:57065800-57068200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:57065800-57068600	Enhancers	Dnd41	blood
21	chr15:57066000-57066200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr15:57066000-57066400	Enhancers	Liver	Liver
23	chr15:57066000-57067600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:57066000-57068000	Weak transcription	Fetal Lung	lung
25	chr15:57066000-57068000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:57066000-57068600	Enhancers	Primary hematopoietic stem cells	blood

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