Variant report

Variant	rs1895640
Chromosome Location	chr15:57053542-57053543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1010700	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518870	0.88[CEU][hapmap]
rs11071287	0.81[EUR][1000 genomes]
rs11071293	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630168	0.96[CEU][hapmap]
rs11632471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11633363	0.82[EUR][1000 genomes]
rs11635333	0.83[EUR][1000 genomes]
rs11638497	0.91[EUR][1000 genomes]
rs11638580	0.91[EUR][1000 genomes]
rs11638707	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs11856558	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs11857706	0.93[CEU][hapmap];0.83[CHB][hapmap]
rs12438709	0.82[EUR][1000 genomes]
rs12442018	0.80[EUR][1000 genomes]
rs12442189	1.00[CEU][hapmap]
rs12591502	1.00[CEU][hapmap]
rs12592389	0.96[CEU][hapmap]
rs12593286	0.83[EUR][1000 genomes]
rs12595822	0.92[EUR][1000 genomes]
rs12898521	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12898760	0.83[EUR][1000 genomes]
rs12900045	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12900244	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12900441	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12901887	0.83[CEU][hapmap]
rs12903283	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs12903336	0.92[CEU][hapmap]
rs12903862	0.92[CEU][hapmap]
rs12905514	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs12906591	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12906749	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12906830	0.82[EUR][1000 genomes]
rs12908806	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12910403	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12910459	0.89[CEU][hapmap]
rs12911381	1.00[CEU][hapmap]
rs12912666	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs12913361	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12913871	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12913960	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12915816	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1424694	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs1477475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17238845	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs1812395	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1979467	0.92[CEU][hapmap]
rs1994081	0.96[CEU][hapmap]
rs2052640	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161934	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2170459	0.89[CEU][hapmap]
rs2170463	0.88[CEU][hapmap]
rs2279298	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2279299	0.96[CEU][hapmap]
rs2414480	0.83[EUR][1000 genomes]
rs28575268	0.89[ASN][1000 genomes]
rs28620278	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs3803457	0.92[CEU][hapmap]
rs3816752	0.81[CEU][hapmap]
rs3929265	0.88[CEU][hapmap]
rs4601984	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774244	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs4774886	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4774892	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs521904	0.90[EUR][1000 genomes]
rs538382	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs553421	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs57387969	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62022931	0.92[EUR][1000 genomes]
rs62022933	0.93[EUR][1000 genomes]
rs62022934	0.95[EUR][1000 genomes]
rs62022954	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493885	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7162317	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7165831	0.81[EUR][1000 genomes]
rs7168178	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7169454	0.83[EUR][1000 genomes]
rs795032	0.90[EUR][1000 genomes]
rs8025391	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs8036217	0.84[EUR][1000 genomes]
rs8041540	0.84[EUR][1000 genomes]
rs8043223	0.96[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57050800-57056200	Weak transcription	Primary T cells from cord blood	blood
2	chr15:57051400-57055800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:57052000-57057200	Weak transcription	Primary B cells from cord blood	blood
4	chr15:57052200-57055000	Weak transcription	Adipose Nuclei	Adipose
5	chr15:57052200-57056200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:57052200-57057800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:57052400-57059800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:57052600-57054800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:57052600-57055400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:57052600-57055800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57052600-57057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:57052600-57057600	Weak transcription	Placenta	Placenta
13	chr15:57052800-57055600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:57052800-57057200	Weak transcription	HSMMtube	muscle
15	chr15:57053000-57055400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:57053000-57055400	Weak transcription	Fetal Lung	lung
17	chr15:57053000-57055600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:57053000-57055800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:57053000-57056400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:57053000-57056400	Weak transcription	NH-A	brain
21	chr15:57053000-57057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:57053000-57057200	Weak transcription	NHLF	lung
23	chr15:57053200-57054800	Weak transcription	Fetal Stomach	stomach
24	chr15:57053200-57055800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:57053200-57057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:57053200-57057200	Weak transcription	HSMM	muscle
27	chr15:57053200-57057200	Weak transcription	Osteobl	bone
28	chr15:57053200-57057400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:57053200-57057400	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:57053200-57057400	Weak transcription	HMEC	breast
31	chr15:57053200-57057400	Weak transcription	NHDF-Ad	bronchial
32	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:57053400-57057200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:57053400-57057400	Weak transcription	NHEK	skin

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