Variant report

Variant	rs12900045
Chromosome Location	chr15:57071852-57071853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57069903..57072539-chr15:57074133..57076126,2	K562	blood:
2	chr15:57059367..57061157-chr15:57069753..57071946,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1010700	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10518870	0.81[CEU][hapmap]
rs11071293	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11630168	0.84[CEU][hapmap]
rs11632471	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638497	0.81[EUR][1000 genomes]
rs11638580	0.81[EUR][1000 genomes]
rs11638707	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs11856558	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs11857706	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs12442189	0.88[CEU][hapmap]
rs12591502	0.87[CEU][hapmap]
rs12592389	0.84[CEU][hapmap]
rs12595822	0.82[EUR][1000 genomes]
rs12898521	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs12900244	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12900441	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12903283	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12903336	0.81[CEU][hapmap]
rs12903862	0.81[CEU][hapmap]
rs12905514	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs12906591	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906749	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12908806	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12910403	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12911381	0.88[CEU][hapmap]
rs12912666	0.85[CEU][hapmap]
rs12913361	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12913871	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12913960	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12915816	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1424694	0.89[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs1477475	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17238845	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1812395	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1895640	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1979467	0.81[CEU][hapmap]
rs1994081	0.85[CEU][hapmap]
rs2052640	0.94[ASN][1000 genomes]
rs2161934	0.95[ASN][1000 genomes]
rs2279298	0.92[CEU][hapmap]
rs2279299	0.84[CEU][hapmap]
rs28575268	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28620278	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs3803457	0.81[CEU][hapmap]
rs3816752	0.92[CEU][hapmap]
rs4601984	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4774244	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs4774886	0.88[CEU][hapmap]
rs521904	0.80[EUR][1000 genomes]
rs538382	0.88[CEU][hapmap]
rs553421	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs57387969	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62022931	0.84[EUR][1000 genomes]
rs62022933	0.83[EUR][1000 genomes]
rs62022934	0.85[EUR][1000 genomes]
rs62022954	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493885	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7162317	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7168178	0.84[CEU][hapmap]
rs8025391	0.92[CEU][hapmap]
rs8043223	0.84[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57068200-57072200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr15:57071600-57072400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:57071600-57073000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:57071800-57074000	Weak transcription	Liver	Liver

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