Variant report

Variant	rs2279298
Chromosome Location	chr15:56968501-56968502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56967231..56970403-chr15:56971950..56973843,3	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1010700	0.83[EUR][1000 genomes]
rs10518870	0.88[CEU][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs11071280	0.87[EUR][1000 genomes]
rs11071287	0.95[AMR][1000 genomes]
rs11630168	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs11632471	0.82[EUR][1000 genomes]
rs11633363	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11635333	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11636994	0.83[ASN][1000 genomes]
rs11638497	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638580	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11638707	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11852277	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11856558	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11857388	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11857706	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12438709	0.86[ASN][1000 genomes]
rs12442018	0.87[ASN][1000 genomes]
rs12442189	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs12591502	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12592389	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12593286	0.85[ASN][1000 genomes]
rs12595822	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12898521	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12898760	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900244	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12900441	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12901887	0.81[CEU][hapmap]
rs12903283	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs12903336	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12903862	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12905514	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906591	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12906830	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12908906	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12910442	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12910459	0.88[CEU][hapmap]
rs12911191	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12911381	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12912666	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs12913361	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12913871	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12913960	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12916079	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1424694	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1477475	0.84[EUR][1000 genomes]
rs16977020	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17238845	0.92[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1895640	0.84[EUR][1000 genomes]
rs1979467	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1994081	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2170459	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2170463	0.88[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2279299	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2414480	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28480089	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28620278	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3784554	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3803457	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3816752	0.92[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs3929265	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4774244	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4774884	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774886	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs521904	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538382	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs553421	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs559736	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62022931	0.82[EUR][1000 genomes]
rs62022934	0.81[EUR][1000 genomes]
rs6493885	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7162317	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7165831	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7168178	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7169454	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7174432	0.87[EUR][1000 genomes]
rs7178796	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7182187	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs795032	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8025391	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8036217	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041540	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8043223	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
2	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:56917800-56990600	Weak transcription	NHLF	lung
4	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
5	chr15:56924000-56990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:56924000-56990800	Weak transcription	NHEK	skin
7	chr15:56928400-56996800	Weak transcription	Gastric	stomach
8	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
9	chr15:56939200-56990800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:56939400-56986000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:56945800-56990800	Weak transcription	Fetal Brain Male	brain
12	chr15:56946000-56990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:56946200-56971000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:56946200-56990800	Weak transcription	Right Ventricle	heart
15	chr15:56950200-56969200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:56954800-56969400	Strong transcription	Fetal Thymus	thymus
17	chr15:56955800-56970200	Weak transcription	Psoas Muscle	Psoas
18	chr15:56955800-56990600	Weak transcription	Esophagus	oesophagus
19	chr15:56956000-56973400	Weak transcription	Aorta	Aorta
20	chr15:56957400-56969000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:56957400-56969200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:56957400-56975600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:56958000-56990200	Weak transcription	A549	lung
24	chr15:56958200-56990200	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:56958400-56972000	Weak transcription	Ovary	ovary
26	chr15:56958400-56990600	Weak transcription	Lung	lung
27	chr15:56958400-56990800	Weak transcription	Brain Germinal Matrix	brain
28	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:56958600-56970200	Weak transcription	Fetal Stomach	stomach
30	chr15:56958600-56972200	Weak transcription	Fetal Kidney	kidney
31	chr15:56958600-56990600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:56959000-56970200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:56959000-56971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:56959200-56969000	Weak transcription	Placenta	Placenta
35	chr15:56959200-56990400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:56959200-56990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:56959200-56990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:56959200-56990600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:56959200-56992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:56959400-56986000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:56959600-56969200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:56960000-56969200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:56960600-56969400	Weak transcription	Brain Angular Gyrus	brain
44	chr15:56960800-56992000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:56961000-56971000	Weak transcription	HUVEC	blood vessel
46	chr15:56961200-56990600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:56961200-56992200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:56962400-56971400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:56962600-56969200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr15:56963000-56970600	Strong transcription	Fetal Lung	lung

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