Variant report

Variant	rs11635333
Chromosome Location	chr15:56963256-56963257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1010700	0.83[EUR][1000 genomes]
rs11071280	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11071287	0.97[AMR][1000 genomes]
rs11630168	0.80[EUR][1000 genomes]
rs11632471	0.81[EUR][1000 genomes]
rs11633363	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638497	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11638580	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11638707	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11852277	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11856558	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11857388	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11857706	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12442018	0.81[ASN][1000 genomes]
rs12442189	0.87[EUR][1000 genomes]
rs12591502	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12592389	0.85[EUR][1000 genomes]
rs12593286	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12595822	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12898521	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12898760	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900244	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12900441	0.84[EUR][1000 genomes]
rs12903283	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12903336	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12903862	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12905514	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906591	0.85[EUR][1000 genomes]
rs12906830	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908906	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12910442	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12911191	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12911381	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912666	0.85[EUR][1000 genomes]
rs12913361	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12913871	0.84[EUR][1000 genomes]
rs12913960	0.85[EUR][1000 genomes]
rs12916079	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1424694	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1477475	0.83[EUR][1000 genomes]
rs17238845	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1895640	0.83[EUR][1000 genomes]
rs1979467	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994081	0.82[EUR][1000 genomes]
rs2170459	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2170463	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2279298	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2279299	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2414480	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28480089	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28620278	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3784554	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3803457	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3816752	0.83[ASN][1000 genomes]
rs4774244	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774884	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4774886	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs521904	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs538382	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs553421	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs559736	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62022931	0.81[EUR][1000 genomes]
rs62022934	0.81[EUR][1000 genomes]
rs6493885	0.84[EUR][1000 genomes]
rs7162317	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7165831	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7168178	0.83[ASN][1000 genomes]
rs7169454	0.81[ASN][1000 genomes]
rs7174432	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7178796	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7182187	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs795032	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025391	0.80[EUR][1000 genomes]
rs8036217	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8041540	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8043223	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3385147	chr15:56961260-56963358	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
2	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:56917800-56990600	Weak transcription	NHLF	lung
4	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
5	chr15:56924000-56990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:56924000-56990800	Weak transcription	NHEK	skin
7	chr15:56928400-56996800	Weak transcription	Gastric	stomach
8	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
9	chr15:56938600-56968200	Weak transcription	HMEC	breast
10	chr15:56939200-56990800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:56939400-56986000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:56944600-56964600	Weak transcription	K562	blood
13	chr15:56945800-56990800	Weak transcription	Fetal Brain Male	brain
14	chr15:56946000-56990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:56946200-56971000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:56946200-56990800	Weak transcription	Right Ventricle	heart
17	chr15:56950200-56969200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:56950400-56965000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:56950600-56967200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:56954000-56968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:56954200-56965200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:56954800-56969400	Strong transcription	Fetal Thymus	thymus
23	chr15:56955800-56970200	Weak transcription	Psoas Muscle	Psoas
24	chr15:56955800-56990600	Weak transcription	Esophagus	oesophagus
25	chr15:56956000-56973400	Weak transcription	Aorta	Aorta
26	chr15:56957400-56967800	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:56957400-56968000	Weak transcription	Fetal Heart	heart
28	chr15:56957400-56969000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:56957400-56969200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:56957400-56975600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:56958000-56990200	Weak transcription	A549	lung
32	chr15:56958200-56968000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:56958200-56990200	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:56958400-56972000	Weak transcription	Ovary	ovary
35	chr15:56958400-56990600	Weak transcription	Lung	lung
36	chr15:56958400-56990800	Weak transcription	Brain Germinal Matrix	brain
37	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
38	chr15:56958600-56967800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:56958600-56968200	Weak transcription	HSMMtube	muscle
40	chr15:56958600-56970200	Weak transcription	Fetal Stomach	stomach
41	chr15:56958600-56972200	Weak transcription	Fetal Kidney	kidney
42	chr15:56958600-56990600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:56959000-56970200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:56959000-56971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:56959200-56964600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr15:56959200-56967200	Weak transcription	NHDF-Ad	bronchial
47	chr15:56959200-56967800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:56959200-56969000	Weak transcription	Placenta	Placenta
49	chr15:56959200-56990400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:56959200-56990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links