Variant report

Variant	rs7165831
Chromosome Location	chr15:56996989-56996990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56986912..56991518-chr15:56996141..56999393,4	K562	blood:
2	chr15:56986912..56989888-chr15:56996141..56997779,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1010700	0.80[EUR][1000 genomes]
rs10152127	0.80[AMR][1000 genomes]
rs11071287	0.86[ASN][1000 genomes]
rs11630168	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11633363	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11635333	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636994	0.81[AMR][1000 genomes]
rs11638497	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638580	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11638707	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12148500	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12438709	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12442018	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592389	0.86[EUR][1000 genomes]
rs12593286	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595822	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12898521	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898760	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12900244	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12900441	0.83[EUR][1000 genomes]
rs12905514	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906591	0.83[EUR][1000 genomes]
rs12906830	0.83[ASN][1000 genomes]
rs12912666	0.81[EUR][1000 genomes]
rs12913361	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12913871	0.82[EUR][1000 genomes]
rs12913960	0.83[EUR][1000 genomes]
rs1424694	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1477475	0.81[EUR][1000 genomes]
rs1895640	0.81[EUR][1000 genomes]
rs1994081	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2052640	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2161934	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2279298	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2279299	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2414480	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28480089	0.85[EUR][1000 genomes]
rs3784554	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3816752	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3929265	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4601984	0.87[EUR][1000 genomes]
rs4774244	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4774886	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs521904	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538382	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs553421	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs559736	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62022931	0.80[EUR][1000 genomes]
rs6493885	0.83[EUR][1000 genomes]
rs7162317	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7168178	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7169454	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs795032	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8025391	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8036217	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8041540	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8043223	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
3	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56984000-56998800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:56987200-56999600	Strong transcription	Fetal Thymus	thymus
7	chr15:56988600-56997200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:56988800-56997200	Strong transcription	Liver	Liver
9	chr15:56988800-57008400	Weak transcription	Fetal Heart	heart
10	chr15:56989800-56998400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:56990000-56998400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:56990000-56999000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:56990000-56999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:56990200-56997200	Strong transcription	Primary B cells from cord blood	blood
15	chr15:56990200-56997200	Strong transcription	Osteobl	bone
16	chr15:56990200-56998400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:56990200-56999400	Strong transcription	Primary B cells from peripheral blood	blood
18	chr15:56990200-56999400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:56990400-56997000	Strong transcription	HSMM	muscle
20	chr15:56990400-56998800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:56990400-56999000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:56990600-56997200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:56990600-56997400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:56990600-56998400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:56990600-56998600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:56991200-56997000	Weak transcription	Hela-S3	cervix
27	chr15:56991200-56997600	Weak transcription	Lung	lung
28	chr15:56991200-56999600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:56991200-57001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:56991400-56997600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:56992400-57008400	Weak transcription	K562	blood
32	chr15:56992400-57010800	Weak transcription	Spleen	Spleen
33	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
34	chr15:56992600-56998600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
37	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:56993200-56997400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:56993200-56998200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:56993200-56998600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:56993200-56999200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:56993200-56999400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:56993200-57000200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:56993200-57001200	Weak transcription	Stomach Mucosa	stomach
45	chr15:56993200-57001600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:56993200-57002400	Weak transcription	NHEK	skin
47	chr15:56993200-57007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:56993200-57008200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:56993200-57010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr15:56993200-57010800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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