Variant report

Variant	rs11071287
Chromosome Location	chr15:57011533-57011534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57010746..57014338-chr15:57023957..57026585,4	MCF-7	breast:
2	chr15:57004343..57007295-chr15:57010153..57011779,2	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1010700	0.82[EUR][1000 genomes]
rs11633363	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11635333	0.97[AMR][1000 genomes]
rs11638497	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638580	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11638707	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11852277	0.80[AMR][1000 genomes]
rs11856558	0.80[AMR][1000 genomes]
rs11857388	0.80[AMR][1000 genomes]
rs11857706	0.80[AMR][1000 genomes]
rs12438709	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12442018	0.89[ASN][1000 genomes]
rs12593286	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12595822	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12898521	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12898760	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12900244	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12900441	0.84[EUR][1000 genomes]
rs12905514	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12906591	0.85[EUR][1000 genomes]
rs12906830	0.99[AMR][1000 genomes]
rs12908906	0.80[AMR][1000 genomes]
rs12910442	0.89[AMR][1000 genomes]
rs12911191	0.88[AMR][1000 genomes]
rs12911381	0.80[AMR][1000 genomes]
rs12913361	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12913871	0.83[EUR][1000 genomes]
rs12913960	0.85[EUR][1000 genomes]
rs12916079	0.89[AMR][1000 genomes]
rs1424694	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1477475	0.81[EUR][1000 genomes]
rs1895640	0.81[EUR][1000 genomes]
rs1979467	0.85[AMR][1000 genomes]
rs2279298	0.95[AMR][1000 genomes]
rs2414480	0.98[AMR][1000 genomes]
rs28620278	0.87[AMR][1000 genomes]
rs3816752	0.86[ASN][1000 genomes]
rs4774244	0.98[AMR][1000 genomes]
rs4774884	0.80[AMR][1000 genomes]
rs4774886	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs521904	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs538382	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs553421	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs559736	0.84[ASN][1000 genomes]
rs62022931	0.81[EUR][1000 genomes]
rs6493885	0.84[EUR][1000 genomes]
rs7162317	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7165831	0.86[ASN][1000 genomes]
rs7168178	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169454	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7178796	0.80[AMR][1000 genomes]
rs7182187	0.80[AMR][1000 genomes]
rs795032	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8025391	0.86[ASN][1000 genomes]
rs8036217	0.98[AMR][1000 genomes]
rs8041540	0.98[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
5	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
7	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:56993200-57011600	Weak transcription	HMEC	breast
9	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
10	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
11	chr15:56995800-57016000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:56996000-57013000	Weak transcription	Ovary	ovary
14	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:56996400-57015800	Weak transcription	Fetal Intestine Large	intestine
16	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
17	chr15:56996400-57022600	Weak transcription	NH-A	brain
18	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:56997000-57016000	Weak transcription	HSMM	muscle
20	chr15:56997200-57015800	Weak transcription	Liver	Liver
21	chr15:56997200-57016400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:56997200-57016600	Weak transcription	Left Ventricle	heart
23	chr15:56997200-57022800	Weak transcription	Gastric	stomach
24	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
25	chr15:56997400-57012400	Weak transcription	NHLF	lung
26	chr15:56997600-57011800	Weak transcription	NHDF-Ad	bronchial
27	chr15:56998000-57016000	Weak transcription	Fetal Lung	lung
28	chr15:56998400-57013800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:56998400-57013800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:56998400-57016200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:56998400-57021200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:56998600-57015800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:56998800-57021800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:56998800-57023400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:56998800-57023800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:56999000-57013800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:56999200-57014000	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:56999200-57017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:56999400-57023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:57008000-57017200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr15:57009200-57012200	Weak transcription	K562	blood
42	chr15:57009200-57015800	Weak transcription	Stomach Mucosa	stomach
43	chr15:57009200-57021400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:57009400-57013000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr15:57009400-57015800	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:57009400-57016000	Weak transcription	Brain Angular Gyrus	brain
47	chr15:57009400-57022800	Weak transcription	Right Atrium	heart
48	chr15:57009400-57024400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:57010000-57011800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:57010000-57012000	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links