Variant report

Variant	rs12913871
Chromosome Location	chr15:57040516-57040517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57039206..57041236-chr15:57044908..57046817,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1010700	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071287	0.83[EUR][1000 genomes]
rs11071293	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11632471	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633363	0.84[EUR][1000 genomes]
rs11635333	0.84[EUR][1000 genomes]
rs11638497	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11638580	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11638707	0.84[EUR][1000 genomes]
rs12438709	0.84[EUR][1000 genomes]
rs12442018	0.82[EUR][1000 genomes]
rs12593286	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12595822	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12898521	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12898760	0.84[EUR][1000 genomes]
rs12900045	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12900244	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12900441	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12905514	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12906591	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12906749	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12906830	0.83[EUR][1000 genomes]
rs12908806	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910403	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12910442	0.81[EUR][1000 genomes]
rs12911191	0.81[EUR][1000 genomes]
rs12912666	0.84[EUR][1000 genomes]
rs12913361	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12913960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12915816	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424694	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1477475	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1812395	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1895640	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2052640	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2161934	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279298	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2414480	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28575268	0.97[ASN][1000 genomes]
rs28620278	0.81[EUR][1000 genomes]
rs4601984	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4774244	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4774886	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774892	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs521904	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs538382	0.90[EUR][1000 genomes]
rs553421	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs559736	0.81[EUR][1000 genomes]
rs57387969	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62022931	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62022933	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62022934	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62022954	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493885	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7162317	0.94[EUR][1000 genomes]
rs7165831	0.82[EUR][1000 genomes]
rs7168178	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7169454	0.85[EUR][1000 genomes]
rs795032	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8025391	0.84[EUR][1000 genomes]
rs8036217	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041540	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57038800-57040800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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