Variant report

Variant	rs12906749
Chromosome Location	chr15:57081941-57081942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010700	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11071293	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11632471	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12900045	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12900441	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12906591	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12908806	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12910403	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12913871	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12913960	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12915816	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1477475	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1812395	0.89[AMR][1000 genomes]
rs1895640	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774892	0.81[AMR][1000 genomes]
rs57387969	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022931	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62022933	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62022934	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62022954	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6493885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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