Variant report

Variant	rs62022934
Chromosome Location	chr15:57042775-57042776
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1010700	0.95[EUR][1000 genomes]
rs10518870	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11071293	0.85[EUR][1000 genomes]
rs11632471	0.92[EUR][1000 genomes]
rs11633363	0.80[EUR][1000 genomes]
rs11635333	0.81[EUR][1000 genomes]
rs11638497	0.89[EUR][1000 genomes]
rs11638580	0.89[EUR][1000 genomes]
rs11638707	0.80[EUR][1000 genomes]
rs12438709	0.81[EUR][1000 genomes]
rs12593286	0.81[EUR][1000 genomes]
rs12595822	0.90[EUR][1000 genomes]
rs12898521	0.91[EUR][1000 genomes]
rs12898760	0.80[EUR][1000 genomes]
rs12900045	0.85[EUR][1000 genomes]
rs12900244	0.89[EUR][1000 genomes]
rs12900441	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12905514	0.89[EUR][1000 genomes]
rs12906591	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12906749	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12908806	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12910403	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12912666	0.80[EUR][1000 genomes]
rs12913361	0.89[EUR][1000 genomes]
rs12913871	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12913960	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12915816	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1424694	0.89[EUR][1000 genomes]
rs1477475	0.95[EUR][1000 genomes]
rs1812395	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1895640	0.95[EUR][1000 genomes]
rs2052640	0.85[EUR][1000 genomes]
rs2161934	0.87[EUR][1000 genomes]
rs2279298	0.81[EUR][1000 genomes]
rs2414480	0.81[EUR][1000 genomes]
rs4601984	0.83[EUR][1000 genomes]
rs4774244	0.81[EUR][1000 genomes]
rs4774886	0.81[EUR][1000 genomes]
rs521904	0.88[EUR][1000 genomes]
rs538382	0.86[EUR][1000 genomes]
rs553421	0.89[EUR][1000 genomes]
rs57387969	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62022931	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62022933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62022954	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6493885	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7162317	0.90[EUR][1000 genomes]
rs7168178	0.82[EUR][1000 genomes]
rs7169454	0.82[EUR][1000 genomes]
rs795032	0.87[EUR][1000 genomes]
rs8025391	0.81[EUR][1000 genomes]
rs8036217	0.81[EUR][1000 genomes]
rs8041540	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57040800-57043400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:57041600-57042800	Enhancers	Osteobl	bone
3	chr15:57041800-57042800	Enhancers	Liver	Liver
4	chr15:57041800-57043200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:57042000-57042800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links