Variant report

Variant	rs4854578
Chromosome Location	chr3:132990181-132990182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1197279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1355777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1513374	0.83[AFR][1000 genomes]
rs3948082	0.98[AFR][1000 genomes]
rs4447761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4638969	0.93[AFR][1000 genomes]
rs4854575	0.87[AFR][1000 genomes]
rs9835622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132984000-132994800	Weak transcription	HSMMtube	muscle
2	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:132988000-132995200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:132988400-132994200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:132988800-132990200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:132988800-132990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:132988800-132990400	Weak transcription	Fetal Stomach	stomach
9	chr3:132988800-132995600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:132989400-132990400	Enhancers	Fetal Brain Male	brain
12	chr3:132989400-132990600	Enhancers	Right Atrium	heart
13	chr3:132989600-132995600	Weak transcription	Psoas Muscle	Psoas
14	chr3:132989800-132990200	Enhancers	Lung	lung
15	chr3:132989800-132990800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:132989800-132992600	Enhancers	Fetal Brain Female	brain
17	chr3:132990000-132990400	Enhancers	Fetal Lung	lung
18	chr3:132990000-132991600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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