Variant report

Variant	rs4854575
Chromosome Location	chr3:132948673-132948674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1197281	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1197284	1.00[YRI][hapmap]
rs1349296	1.00[YRI][hapmap]
rs1355777	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2370049	0.83[AMR][1000 genomes]
rs3948082	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4447761	0.83[AFR][1000 genomes]
rs4498042	0.83[AMR][1000 genomes]
rs4638969	0.81[AFR][1000 genomes]
rs4854578	0.87[AFR][1000 genomes]
rs6768513	0.83[AMR][1000 genomes]
rs9835622	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132943600-132948800	Weak transcription	Fetal Brain Female	brain
2	chr3:132947000-132948800	Weak transcription	Fetal Lung	lung
3	chr3:132947000-132950600	Weak transcription	HSMMtube	muscle
4	chr3:132947600-132952400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:132947800-132949800	Enhancers	Fetal Brain Male	brain
6	chr3:132948000-132950000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:132948200-132956400	Weak transcription	HSMM	muscle
8	chr3:132948400-132949800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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