Variant report

Variant	rs1197284
Chromosome Location	chr3:133045577-133045578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11914347	0.83[MKK][hapmap]
rs1197279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197281	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1349296	1.00[YRI][hapmap]
rs1355777	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1513374	0.83[LWK][hapmap];0.85[MKK][hapmap]
rs2044771	1.00[ASW][hapmap]
rs3948082	0.86[AFR][1000 genomes]
rs4447761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618219	0.83[MKK][hapmap]
rs4638969	0.95[AFR][1000 genomes]
rs4854575	1.00[YRI][hapmap]
rs4854578	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7613727	0.83[MKK][hapmap]
rs9835622	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133043600-133046600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links