Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TOPBP1-2	chr3:132965270-132967441	ENSG00000251011.1

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11914347	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197280	0.95[AFR][1000 genomes]
rs1197284	0.83[MKK][hapmap]
rs1398761	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1513369	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1708388	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1795109	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1913283	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2048628	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2370047	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2370049	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2699871	0.98[AFR][1000 genomes]
rs2887728	0.95[AFR][1000 genomes]
rs4298040	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs4416380	0.86[AFR][1000 genomes]
rs4498042	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6439397	0.87[AFR][1000 genomes]
rs6439399	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs6768513	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7613727	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624059	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs938232	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs938233	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9835622	0.83[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132958200-132967200	Weak transcription	Fetal Lung	lung
3	chr3:132961200-132967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:132963600-132969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:132964400-132970400	Weak transcription	Right Atrium	heart
6	chr3:132965400-132965600	Enhancers	Lung	lung

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