Variant report

Variant	rs1398761
Chromosome Location	chr3:132996612-132996613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11914347	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1197280	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1513367	0.87[AMR][1000 genomes]
rs1513369	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1708388	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1795109	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1849504	1.00[AMR][1000 genomes]
rs1913283	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2048628	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2370047	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2370049	0.97[AFR][1000 genomes]
rs2699871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2887728	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4298040	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4416380	0.86[AFR][1000 genomes]
rs4498042	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs4618219	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6439397	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6439399	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768513	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7613727	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs7624059	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs938232	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs938233	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:132990200-133002800	Weak transcription	Lung	lung
5	chr3:132990600-133002800	Weak transcription	Right Atrium	heart
6	chr3:132994200-132999800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:132994800-132997200	Enhancers	HSMMtube	muscle
8	chr3:132995200-132997000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:132995600-132996800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:132995800-132999600	Weak transcription	Psoas Muscle	Psoas
11	chr3:132995800-133001600	Weak transcription	Brain Germinal Matrix	brain
12	chr3:132995800-133005400	Weak transcription	Fetal Lung	lung
13	chr3:132996000-132996800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:132996000-133003000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:132996200-133012200	Weak transcription	HSMM	muscle
16	chr3:132996400-132997200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:132996400-132997400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:132996400-132997400	Enhancers	HUVEC	blood vessel
19	chr3:132996600-132996800	Enhancers	Fetal Thymus	thymus
20	chr3:132996600-132997200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:132996600-132997200	Enhancers	Osteobl	bone
22	chr3:132996600-132997400	Enhancers	NH-A	brain
23	chr3:132996600-132998200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:132996600-133002400	Weak transcription	Fetal Brain Female	brain
25	chr3:132996600-133003400	Weak transcription	Fetal Brain Male	brain

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