Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11914347	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197280	0.88[AFR][1000 genomes]
rs1197284	0.83[MKK][hapmap]
rs1398761	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs1513369	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs1708388	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs1795109	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs1913283	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs2048628	0.85[YRI][hapmap]
rs2370047	0.85[YRI][hapmap]
rs2370049	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2699871	0.92[AFR][1000 genomes]
rs2887728	0.88[AFR][1000 genomes]
rs4298040	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs4498042	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4618219	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6439397	0.81[AFR][1000 genomes]
rs6439399	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[AFR][1000 genomes]
rs6768513	0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7624059	0.84[YRI][hapmap];0.93[AFR][1000 genomes]
rs938232	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs938233	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs9835622	0.83[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7613727	DDX43	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132964400-132970400	Weak transcription	Right Atrium	heart
3	chr3:132968000-132973800	Weak transcription	Fetal Brain Male	brain
4	chr3:132968000-132984200	Weak transcription	Psoas Muscle	Psoas

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