Variant report

Variant	rs2699871
Chromosome Location	chr3:133025451-133025452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11914347	0.98[AFR][1000 genomes]
rs1197280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1398761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1513367	0.87[AMR][1000 genomes]
rs1513369	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1708388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1795109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1849504	1.00[AMR][1000 genomes]
rs1913283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2048628	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2370049	0.95[AFR][1000 genomes]
rs2887728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4298040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4416380	0.84[AFR][1000 genomes]
rs4498042	0.90[AFR][1000 genomes]
rs4618219	0.98[AFR][1000 genomes]
rs6439397	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6439399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768513	0.96[AFR][1000 genomes]
rs7613727	0.92[AFR][1000 genomes]
rs7624059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs938232	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs938233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4016	chr3:133015463-133032477	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv12956	chr3:133016100-133025982	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2757011	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2759179	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1014344	chr3:133024614-133042938	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
2	chr3:133021000-133031800	Weak transcription	HSMM	muscle
3	chr3:133021000-133037600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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