Variant report

Variant	rs4498042
Chromosome Location	chr3:132925704-132925705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11914347	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1197280	0.86[AFR][1000 genomes]
rs1398761	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs1513369	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs1708388	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs1795109	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs1913283	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs2048628	0.93[YRI][hapmap]
rs2370047	0.93[YRI][hapmap];0.85[AMR][1000 genomes]
rs2370049	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2699871	0.90[AFR][1000 genomes]
rs2887728	0.86[AFR][1000 genomes]
rs3948082	0.83[AMR][1000 genomes]
rs4298040	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs4416380	0.81[AFR][1000 genomes]
rs4618219	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4854575	0.83[AMR][1000 genomes]
rs6439399	0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs6768513	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7613727	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7624059	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs938232	0.93[YRI][hapmap]
rs938233	0.93[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132919400-132928600	Weak transcription	HSMMtube	muscle
2	chr3:132919600-132929600	Weak transcription	Fetal Lung	lung
3	chr3:132923400-132928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:132925200-132925800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr3:132925200-132926600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:132925400-132925800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:132925400-132925800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:132925400-132926200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:132925400-132926200	Enhancers	Placenta	Placenta
10	chr3:132925400-132926400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:132925400-132926400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:132925400-132926400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:132925400-132927400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:132925600-132925800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr3:132925600-132926200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr3:132925600-132926200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:132925600-132926400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:132925600-132926600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:132925600-132926600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:132925600-132926600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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