Variant report

Variant	rs3948082
Chromosome Location	chr3:132961948-132961949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1197279	0.88[AFR][1000 genomes]
rs1197281	0.93[AFR][1000 genomes]
rs1197284	0.86[AFR][1000 genomes]
rs1355777	0.98[AFR][1000 genomes]
rs1513374	0.81[AFR][1000 genomes]
rs2370049	0.83[AMR][1000 genomes]
rs4447761	0.93[AFR][1000 genomes]
rs4498042	0.83[AMR][1000 genomes]
rs4638969	0.91[AFR][1000 genomes]
rs4854575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4854578	0.98[AFR][1000 genomes]
rs6768513	0.83[AMR][1000 genomes]
rs9835622	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132958200-132967200	Weak transcription	Fetal Lung	lung
3	chr3:132961200-132967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:132961800-132962200	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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