Variant report
| Variant | rs1197280 |
|---|---|
| Chromosome Location | chr3:133055048-133055049 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:132734695..132737258-chr3:133052600..133055339,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11914347 | 0.95[AFR][1000 genomes] |
| rs1398761 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1513367 | 0.87[AMR][1000 genomes] |
| rs1513369 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1708388 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1795109 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1849504 | 1.00[AMR][1000 genomes] |
| rs1913283 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2048628 | 0.87[AMR][1000 genomes] |
| rs2370049 | 0.95[AFR][1000 genomes] |
| rs2699871 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2887728 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4298040 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4416380 | 0.84[AFR][1000 genomes] |
| rs4498042 | 0.86[AFR][1000 genomes] |
| rs4618219 | 0.95[AFR][1000 genomes] |
| rs6439397 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs6439399 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6768513 | 0.93[AFR][1000 genomes] |
| rs7613727 | 0.88[AFR][1000 genomes] |
| rs7624059 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs938232 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs938233 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877503 | chr3:133035774-133104631 | Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:133054600-133056400 | Strong transcription | Cortex derived primary cultured neurospheres | brain |
