Variant report

Variant	rs6439399
Chromosome Location	chr3:132989793-132989794
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:132983643..132985958-chr3:132988828..132991292,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11914347	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs1197280	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1398761	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1513367	0.87[AMR][1000 genomes]
rs1513369	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1708388	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1795109	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1849504	1.00[AMR][1000 genomes]
rs1913283	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2048628	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2370047	0.92[YRI][hapmap]
rs2370049	0.93[AFR][1000 genomes]
rs2699871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2887728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4298040	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4416380	0.83[AFR][1000 genomes]
rs4498042	0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs4618219	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs6439397	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6768513	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs7613727	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[AFR][1000 genomes]
rs7624059	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs938232	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs938233	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132984000-132994800	Weak transcription	HSMMtube	muscle
2	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:132986400-132989800	Weak transcription	Lung	lung
4	chr3:132986800-132990000	Enhancers	Fetal Muscle Leg	muscle
5	chr3:132987600-132989800	Enhancers	Fetal Lung	lung
6	chr3:132988000-132995200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:132988400-132994200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:132988800-132990200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:132988800-132990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:132988800-132990400	Weak transcription	Fetal Stomach	stomach
12	chr3:132988800-132995600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:132989200-132989800	Weak transcription	Fetal Brain Female	brain
15	chr3:132989400-132990400	Enhancers	Fetal Brain Male	brain
16	chr3:132989400-132990600	Enhancers	Right Atrium	heart
17	chr3:132989600-132995600	Weak transcription	Psoas Muscle	Psoas

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