Variant report

Variant	rs4864822
Chromosome Location	chr4:54651978-54651979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1498830	0.83[ASN][1000 genomes]
rs2088582	0.84[ASN][1000 genomes]
rs2412499	0.83[ASN][1000 genomes]
rs4292386	0.81[ASN][1000 genomes]
rs4864488	0.83[ASN][1000 genomes]
rs4864820	0.82[ASN][1000 genomes]
rs6813393	0.83[ASN][1000 genomes]
rs6816871	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6831739	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7378471	0.85[ASN][1000 genomes]
rs7694601	0.83[ASN][1000 genomes]
rs904414	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:54648400-54652400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54648400-54652800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54649000-54652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:54649200-54652400	Weak transcription	Osteobl	bone
7	chr4:54649600-54652800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:54650600-54654600	Enhancers	NHDF-Ad	bronchial
9	chr4:54651000-54653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:54651000-54654200	Enhancers	Fetal Stomach	stomach
11	chr4:54651400-54653600	Enhancers	Ovary	ovary
12	chr4:54651400-54654400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:54651400-54654600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:54651800-54652000	Enhancers	Colon Smooth Muscle	Colon
15	chr4:54651800-54652000	Enhancers	Fetal Lung	lung
16	chr4:54651800-54653800	Enhancers	NHLF	lung
17	chr4:54651800-54654200	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links