Variant report

Variant	rs4864488
Chromosome Location	chr4:54646237-54646238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1498830	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088582	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2412499	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2590763	0.81[EUR][1000 genomes]
rs2616431	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616433	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2616434	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4292386	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864820	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864822	0.83[ASN][1000 genomes]
rs59481386	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61202300	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6813393	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816871	0.98[ASN][1000 genomes]
rs6828755	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831739	0.95[ASN][1000 genomes]
rs6842780	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7378471	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7655896	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676596	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7694601	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904414	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54643800-54647400	Weak transcription	Liver	Liver
2	chr4:54644000-54648000	Weak transcription	NH-A	brain
3	chr4:54644200-54647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54644200-54648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:54644600-54646800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:54644600-54647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:54644800-54647000	Weak transcription	NHLF	lung
8	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:54645200-54646600	Weak transcription	Osteobl	bone
10	chr4:54645200-54647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:54645200-54648000	Weak transcription	Fetal Stomach	stomach
12	chr4:54645400-54646400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:54645400-54646400	Weak transcription	A549	lung
14	chr4:54645400-54646600	Weak transcription	NHDF-Ad	bronchial
15	chr4:54646200-54646400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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